H. Birali Runesha

Associate vice president for research computing 
Director of the Research Computing Center
Phone: 773.702.5977 | Fax: 773.834.9199 | runesha@uchicago.edu

As associate vice president for research computing and director of the Research Computing Center, Hakizumwami Birali Runesha provides leadership and vision for advancing all aspects of research computing strategies at the University. He is responsible for the design, configuration, and administration of centrally managed high-performance computing (HPC) systems and related services across the University. In addition, he provides access to advanced technical expertise, user support, advice, and training to the research community.

Dr. Runesha is a seasoned professional who brings to the University of Chicago HPC management leadership and more than 17 years of experience in high-performance computing and scientific software development. He earned his MS and Ph.D. in civil engineering at Old Dominion University. Prior to joining the University of Chicago, he served as director of scientific computing and applications at the University of Minnesota Supercomputing Institute (MSI), managing the scientific computing, biological computing, visualization, and application development groups. In addition to overseeing the strategic planning of HPC resources and leading annual procurement of supercomputing resources at MSI, Runesha created the MSI Application software development group and the MSI Scientific Data Management Laboratory to meet the evolving data management and database development needs of university researchers.

Dr. Runesha has developed open source software programs and fast parallel solvers for large-scale finite element applications. He served as principal investigator on a number of research grants and is the author of a number of journal articles, proceedings and conference papers. He has given many invited talks, seminars, courses, and workshops on various HPC topics.

Prior to joining the University of Minnesota, Runesha was a research scholar at the Hong Kong University of Science and Technology developing parallel computing algorithms for engineering applications, a research associate for the Multidisciplinary Parallel-Vector Computer Center at Old Dominion University, and an assistant professor at the University of Kinshasa.

 

Waqqar Ahmed

Training and Outreach Specialist
Phone: 773-834-3183 | waqqar@uchicago.edu

Waqqar is the Training and Outreach Specialist at the RCC with expertise in communication and project management. He is responsible for outreach and communications for the RCC, event planning and organization, and website and social media management.

Waqqar has spent the last seven years working as a teacher and a coordinator in Saudi Arabia, the UAE, Libya, and the UK. He has taught at universities as a lecturer in English and at high schools as an English, Math, and Science teacher. He holds a Bachelor of Arts in Law and Politics from Keele University and Master of Science in Politics and Government of the European Union from the London School of Economics.

 

Huma Asif, PhD

Computational Scientist
humaasif@uchicago.edu

Huma Asif, PhD is a Computational scientist at the RCC. Her expertise lies in the areas of sequencing, comparative analysis of genomes, and understanding the genetic basis of genome evolution using phylogenetics and Statistical approaches. Previously, she has worked as a staff scientist in the Psychiatry Department, University of Chicago for three years on a project entitled “Bipolar and Schizophrenia Network for Intermediate Phenotypes (BSNIP)”. Before joining University of Chicago, she worked as a Bioinformatics analyst at the Institute of Butantan, Sao Paulo, Brazil.

 

Kathy Bauman

Assistant Director for Project Management
kbauman@uchicago.edu

Kathy is the Assistant Director for Project Management for the Research Computing Center. Her responsibilities include managing RCC projects, programs, and new initiatives; partnering with stakeholders, faculty, and partners to cooperatively meet quality and timeline goals. She also works with RCC leadership to strategize, develop, and implement policy, process, and project quality improvements. 

Kathy has extensive experience in data and software quality management; having successfully led comprehensive operational process, and data and product quality management initiatives. Prior to joining the RCC, Kathy held several leadership roles, including as Director of Quality Assurance and Manager of Data Quality Control for marketing organizations focused on high volume digital content management for a wide range of retail clients. Kathy earned her bachelor’s degree in Computer Science from Northern Illinois University and is a Certified Scrum Master through the Scrum Alliance.  

 

Russell Burk

Grant Specialist
rsburk@uchicago.edu

Russell is the Grant Specialist at the RCC. He is responsible for writing, research, and various other forms of pre-award and post-award grant support for the RCC and partnered investigators.

Russell is a PhD Candidate in Religion from Harvard University, and he spent the last four years as a full time PhD student and the last two as a teaching fellow at Harvard. He has a master’s degree in Anthropology and Sociology of Religion from the University of Chicago Divinity School.

 

Peter Carbonetto

Computational scientist, statistics and genetics
pcarbo@uchicago.edu

Peter is a computational scientist at the RCC, with expertise in quantitative and data-intensive aspects of genetics and statistics. He has spent most of the past seven years conducting research at the interface of statistics, large-scale computation, and genomics, with additional background in computer science, machine learning, numerical optimization and computational statistics.

Before joining the RCC team, Peter was a staff scientist at Ancestry.com. Prior to that, he was a research fellow in the Department of Human Genetics at the University of Chicago, where he advanced statistical approaches for the discovery of genetic factors contributing to complex diseases and traits in mice and humans. He holds a Ph.D. in computer science from the University of British Columbia.

 

Mengxing Cheng

Principle HPC system administrator
773.702.4070 | mxcheng@uchicago.edu

Mengxing is an HPC system administrator for the Research Computing Center. His primary role is to administrate and develop the center’s infrastructure hardware and middleware. In addition, he works closely with the consultants to provide best practice solutions to faculty, students, and research fellows.

Mengxing received his Ph.D. in physics from the University of Florida in 2010 for his theoretical research on quantum magnetic impurity. Prior to joining the RCC team, he worked as research associate at the University of Florida and HPC system administrator at Florida International University. He has been participating in several NSF projects to enhance performance and security of cyberinfrastructure.

 

Kimberly Grasch

Assistant director, finance, human resources, and faculty programs
Phone: 773.702.0159 | kgrasch@uchicago.edu

Kim is the assistant director of finance, human resources, and faculty programs for the Research Computing Center. She is responsible for allocating and authorizing expenses, processing payments, procurement, and budget reconciliations. Kim also serves as a human resource generalist for the department, including recruiting staff and student employees.

Kim has more than eight years of experience in non-profit management in the areas of finance, human resources, and event planning. Prior to joining the RCC in 2015, Kim worked for Alumni Relations and Human Resource Services at the University. She has a master’s degree in Human Resource Development from Indiana State University.

 

Cynthia Keel

Administrative assistant to the director
Phone: 773.702.3374 | Cynthia1@uchicago.edu

Cynthia is an experienced administrative professional with a strong background in nonprofit administration. She has been with the University of Chicago for almost 12 years and has worked in social services, primary public school education, religious, and community development while also heavily volunteering in these areas. She is in pursuit of her master’s degree and becoming a certified nonprofit professional from North Park University.

 

Ping-Chang Lin 

Computational Scientist, Machine learning and image analysis
Phone: 773.702.4225  pcclin@uchicago.edu

Ping-Chang is a Computational Scientist at the Research Computing Center (RCC) at the University of Chicago with expertise in image and spectroscopy analysis, conventional machine learning algorithm implementation, and deep learning architecture implementation and development. 

Prior to joining the RCC team, Ping-Chang was a research track faculty scientist at Georgia Cancer Center, Augusta University in Georgia and a research track assistant professor at the Department of Radiology, Howard University in Washington, DC. Where he pursued projects related to cancerous tumor diagnosis in medical images, including designing convolutional neural network models to improve the tumor image segmentation in MRI, developing recurrent neural network algorithms to predict the clinical efficacy of a protocol used in managing inpatient hyperglycemia of hospitalized patients, and constructing MRI sequences to shorten the diffusion tensor imaging acquisition in MRI.  Ping-Chang completed his postdoctoral training at National Institute on Aging, National Institutes of Health before working at the University of Kansas Medical Center as a Senior Research Associate. he holds a Ph.D. in Biophysics from the University of California, Davis.

 

Brooke Luetgert

Computational Scientist, Social Sciences
luetgert@uchicago.edu

Brooke Luetgert, PhD is a Computational Scientist for the Social Sciences Division. Prior to joining the RCC, she was an Assistant Professor of Political Science and Research Methodology at Sabanci University in Istanbul, Turkey. She has multiple, distinguished publications on legislative compliance, European Union politics and public opinion formation. Her work on mixing methodological approaches to measure EU compliance received post-doctoral funding through the EU CORDIS Marie Curie program as well as a generous grant from Land Baden-Württemburg. Brooke lives on a farm with her husband and their three amazing little people. Together, they also run a thriving center for competitive robotics and computer coding in Batavia, IL.

 

Milson Munakami

Scientific Applications Developer
mmunakami@uchicago.edu

Milson is a Scientific Application Developer at the RCC with a primary focus on developing and building dynamic and more interactive web pages using a variety of scientific applications, techniques, and tools. His role also involves providing technical support to troubleshoot user, hardware, and scientific software problems, evaluation and testing of new or future development, releases, and enhancements.

Milson has a master’s degree in computer science from Boise State University. He is an experienced professional with great experience working in multifaceted enterprise environments and has held various important positions in different IT companies. He is passionate about core technologies like .NET, C, C++, C#, Java, Ruby, and Python, to name just a few. He is also a Microsoft Certified Technology Specialist (MCTS) and Microsoft Certified Professional Developer (MCPD) who writes, runs codes, and love to contribute to the community. He strongly believes that learning new skills is a never-ending process and it that it gets bigger and better when shared with others.

 

Prathyusha Rani

Scientific Application Developer
pmerla@uchicago.edu

Prathyusha Rani is a Scientific Applications Developer with the RCC at the University of Chicago developing high-quality Microservices and Container Orchestration solutions. Prior to joining the RCC, she was a Microservices Developer with NBC Universal. It is her role to solve complex problems in Software Engineering, HPC, and Machine Learning.

She has a master’s degree in computer science from Bridgewater State University. She has worked with leading MNC companies, and she has also contributed code to various open-source projects. She holds numerous Cloud and Container Certifications.

 

Kalyan Reddivari 

Applications Developer/Team Lead 
kreddivari@uchicago.edu 

Kalyan Reddivari is an Application Development Team Lead with the RCC developing high-quality web applications and project architecture design. His ongoing work includes developing and building dynamic and more interactive web pages using a variety of scientific applications, techniques, and tools. His role also involves providing technical guidance and support for web applications. 

Kalyan has a master’s degree in computer science from Georgia Southwestern State University and an MBA at the University of Alabama in Project Management specialization. He is an experienced professional with a lot of experience working in enterprise applications. Previously, he was an Anchor at Ford Motor Company and has held various positions in different IT companies. He has extensive experience in different technologies including Java, Python, Hadoop, Scala, SOA, TIBCO, Web 3.0, and DevOps. He had experience in AGILE management and process improvement solutions. He is a technology contributor to the opensource communities like Apache and GitHub. He believes in continuous learning and improvement.

 

Parmanand Sinha

Computational Scientist, GIS
Phone: 773-702-4541 | pnsinha@uchicago.edu

Parmanand is a computational scientist at the RCC, with expertise in geospatial information sciences, remote sensing, and spatial statistics. Previously he has worked on population modeling and developing methods for dealing with spatial autocorrelation in a spatial data-mining context.

Parmanand holds a Bachelor of Architecture degree from the Indian Institute of Technology, Roorkee. He completed his Ph.D. in Geospatial Information Sciences in January 2015, at the University of Texas, Dallas, under the supervision of Dr. Daniel A. Griffith. His first postdoctoral appointment was with the Spatial Sciences Census Research group, under Dr. Nicholas Nagle, at the University of Tennessee. He investigated the spatial structure of the American population and to design optimal sampling and reporting units for census surveys. In his second postdoctoral appointment, he worked on the WorldPop project at the University of Louisville focusing on developing approaches for dealing with computational issues in high-resolution population mapping.

 

Yuxing Peng, PhD'14

Computational scientist, chemistry
Phone: 773.702.6034 | yuxing@uchicago.edu

As a computational scientist at the RCC, Yuxing works closely with faculty and researchers and serves as a technical domain expert in supporting and advising faculty on using high-performance computing (HPC) for their research and grant writing. He is experienced in programming, debugging, benchmarking, and conducting large-scale computer simulations on various types of parallel computing facilities provided by different HPC centers. His interest is to bridge the needs of the scientific research community to the capabilities of rapidly evolving parallel computing technology by providing advanced counseling and support.

Yuxing earned his doctorate in computational chemistry from the University of Chicago. During his graduate studies, Yuxing was involved in a wide range of projects with multiscale reactive modeling, molecular dynamics simulations, and coarse-graining simulations. He also participated in the writing of many research proposals applying external funds or computing resources for theoretical studies.

 

Jonathan Skone

Computational scientist, molecular engineering
Phone: 773.702.0507 | jhskone@uchicago.edu

Jonathan is a computational scientist with the RCC at the University of Chicago, where his primary role is to provide HPC solutions to support the multidisciplinary research efforts of the Institute for Molecular Engineering. He is also an affiliate of Argonne National Laboratory, serving to strengthen the research computing partnership between the University and Argonne.

Prior to joining the RCC team, Jonathan held research associate appointments with Brookhaven National Laboratory, the University of California, Davis, and Argonne National Laboratory, where he pursued projects related to energy conversion and storage processes as well as methodological development for molecular and condensed matter systems. He holds a Ph.D. in chemistry from Pennsylvania State University.

 

Teodora Szasz, PhD

Computational Scientist - Image Analysis, Visualization, and Machine Learning
Phone: 773.834.2917 | tszasz@uchicago.edu

Teodora engages the community of researchers involved in computational image analysis at The University of Chicago across multi-disciplinary areas including: Biology, Physics, Chemistry, Economics, Public Policy, and Cancer Research.

She serves as a catalyst for solving challenging questions in the research teams that she is supporting, such as: predicting oxygen support for COVID-19 patients, detecting prostate cancer, and analysis of messages related to identity in official educational setting. Teodora brings to the field practical expertise in state-of-the-art advanced technology: Supercomputers, Cloud Computing, Machine Learning, Image Analysis Techniques, and Big Data.

Prior to joining RCC, Teodora earned her doctorate degree in Computer Science at Toulouse University in France. She won international challenges (IUS PICMUS 2016) in beamforming for ultrasound medical imaging.

 

Jeffrey Tharsen, PhD'15

Computational scientist, digital humanities
Phone: 773.834.5534 | tharsen@uchicago.edu

As the digital humanities computational scientist at the RCC, Jeff works closely with humanities faculty and researchers and serves as research and computing expert for digital and computational approaches to humanistic inquiry. He is experienced in a range of programming languages, database and archival systems architecture, and customized application development. His primary interest lies in developing computational methods for philological and linguistic research, advanced methods for information storage and retrieval, and data visualization.

Jeff recently earned his doctorate from the University of Chicago's East Asian Languages & Civilizations department, primarily working in the fields of Chinese philology, poetics, and paleography. During his graduate studies, Jeff received a Fulbright award for his Digital Etymological Dictionary of Old Chinese, a software suite which facilitates the analysis of Chinese historical phonology. He has also consulted on grant applications for a variety of digital humanities projects and regularly presents at various national and international conferences.