cellranger/2.1.1

name
cellranger
version
2.1.1.
description
An analysis pipeline for processing Chromium single-cell RNA-sequences. Capable of converting BCL files from Illumina sequencing systems to FASTQ file formats.
url
https://support.10xgenomics.com/single-cell-gene-expression/software/overview/welcome
license
https://support.10xgenomics.com/docs/license
dependencies
bcl2fastq2
tags
biology, genetics, genomics
usage
Use the module system to load this version of cellranger: module load midway2; module load cellranger/2.1.1

10xGenomics has licensing procedures that any user of their software should be aware of before making use of their software. You can read the full terms of their license agreement at: https://support.10xgenomics.com/docs/license

See also

cellranger/2.1.1 (default), cellranger/3.0.0
All versions available for cellranger.
Software Modules
Full list of software modules available on Midway.
Software Modules Tutorial
A tutorial on Midway modules and how to use them.